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Predict any scan and export detections - #24
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predict.py takes input=<scan or folder> besides the test patients of the split. Input scans are skull-stripped and normalized like the training data (skull_strip, the training's normalization). For every case it writes the probability map and the detections: center and radius in mm, size and probability, as CSV and as .fcsv markups for 3D Slicer. remove_skull.py and predict.py share skull_strip and normalize_volume.
youssefassis
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Sep 30, 2026
Predict any scan and export detections
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predict.pycan now predict any scan or folder of scans, besides the test patients:Scans are skull-stripped and normalized like the training data. For every case it writes the probability map and the detections (center and radius in mm, size, probability) as CSV and as
.fcsvmarkups for 3D Slicer.