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polyAsite_workflow
polyAsite_workflow PublicPipeline for the processing of 3' end sequencing libraries
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PAQR_KAPAC
PAQR_KAPAC Publicscripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site…
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Repositories
- PAQR3 Public
PAQR3 is the updated version of the PAQR tool for quantifying poly(A) sites from bulk RNA-Seq data.
- crispr-projects Public
This repository contains the computational workflows and downstream analysis notebooks related to CRISPR projects in Zavolan lab.
- mirflowz Public
Snakemake workflow for the mapping and quantification of miRNAs and isomiRs from miRNA-Seq libraries.
- ONT_seq_PAIP1_Hondele Public
This repository contains the computational workflows and downstream analysis notebooks related to the polyA tail length changes linked to PAIP1 perturbations, conducted by the lab of Prof. Maria Hondele.
- zavolab_pyutils Public
This repository contains python modules dedicated to various utilities for genomic data analysis, like library size normalization, annotation conversion etc
- nanoflowz Public
This repository contains a set of workflows and tools for processing and analysis of ONT RNA long-read sequencing data
- APA_localization Public
This repository is dedicated to lab's projects related to the studying of subcellular localization of alternative polyadenylation (APA) isoforms.
- IPA-immune Public
- CellType_PolyASite_Atlas Public
This repository is dedicated to the update of PolyASite Atlas to v4.0 with cell-type-level quantification of PAS usage
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