Alexandrov Lab

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1. EnsembleVariantCallingPipeline EnsembleVariantCallingPipeline Public

   The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (Mutect2, Strelka2, Varscan2, MuSE) and indel variant calling…

   Shell 16 2

2. DupCaller DupCaller Public

   Python 14 6

3. DeepHRD DeepHRD Public

   Python 8 2

4. HRProfiler HRProfiler Public

   Homologous Recombination Profiler (HRProfiler) is a classification tool that predicts the HRD probability for both whole-genome and exome-sequenced samples using HRD-specific mutation and copy numb…

   Python 5

5. SomaticBunny SomaticBunny Public

   SomaticBunny is an Nextflow pipeline that calls ensemble somatic variants in a consensus manner from WGS /WES sequencing

   Nextflow 1

6. DupCaller_manuscript DupCaller_manuscript Public

   Python