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1. AlexandrovLabPublications/Mutographs_CRC AlexandrovLabPublications/Mutographs_CRC Public

   Scripts used for Díaz-Gay, dos Santos, Moody, et al. 2025 manuscript.

   R 3 1

2. SigProfilerSuite/SigProfilerAssignment SigProfilerSuite/SigProfilerAssignment Public

   Assignment of known mutational signatures to individual samples and individual somatic mutations

   Python 81 20

3. SigProfilerSuite/SigProfilerExtractor SigProfilerSuite/SigProfilerExtractor Public

   SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities i…

   Python 188 62

4. SigProfilerSuite/SigProfilerClusters SigProfilerSuite/SigProfilerClusters Public

   Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.

   Python 15 4

5. musica musica Public

   MuSiCa - Mutational Signatures in Cancer

   R 22 12