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Bring over the unmerged commits of the old v1.1.0 branch (sampling='auto', ePIE removal) - #44

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TomaSusi merged 14 commits into

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docs/sampling-auto-and-epie-removal

Oct 22, 2026

Merged

Bring over the unmerged commits of the old v1.1.0 branch (sampling='auto', ePIE removal)#44
TomaSusi merged 14 commits into
devfrom
docs/sampling-auto-and-epie-removal

Commits on Oct 22, 2026
- Remove the ePIE tutorial and its trace (abtem.reconstruct is being removed)
  
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- Reorder potentials walkthrough, add gpts as an explicit auto override
  
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- Switch to sampling='auto'/slice_thickness='auto' in the walkthrough
  
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- Convert ensembles.ipynb to auto; convergence.ipynb sweep to explicit gpts
  
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- Keep structured_illumination.ipynb's sampling manual (large structures)
  
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- Convert phonon_loss.ipynb to auto sampling/slice_thickness
  
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- Convert one of core_loss.ipynb's two Potential calls to auto thickness
  
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- Convert 5 example quickstarts to auto sampling/slice_thickness
  
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- Convert cbed_quickstart.ipynb to auto sampling/slice_thickness
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- Convert interactions.ipynb to auto slice_thickness
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- Keep prism_quickstart.ipynb and saed_quickstart.ipynb sampling manual
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- Re-execute ensembles and hrtem_quickstart with sampling='auto'
  
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- Re-execute the notebooks converted to automatic sampling against abTEM dev
  
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- Update core_loss and phonon_loss for abTEM dev and re-execute them
  
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Commits

Commits on Oct 22, 2026