TomaSusi · Oct 22, 2026 · Aug 29, 2026 · Aug 30, 2026 · Aug 30, 2026 · Aug 30, 2026
diff --git a/docs/_toc.yml b/docs/_toc.yml
@@ -40,7 +40,6 @@ parts:
         - file: user_guide/tutorials/blochwave
         - file: user_guide/tutorials/real_space
         - file: user_guide/tutorials/prism
-        #- file: user_guide/tutorials/epie
         #- file: user_guide/tutorials/visualizations
         - file: user_guide/tutorials/core_loss
         - file: user_guide/tutorials/phonon_loss

diff --git a/docs/references.bib b/docs/references.bib
@@ -260,21 +260,6 @@ @article{ribet_shaping
   urldate = {2025-04-18},
 }
 
-@article{maiden_pie,
-  title = {Further Improvements to the Ptychographical Iterative Engine},
-  author = {Maiden, Andrew and Johnson, Daniel and Li, Peng},
-  year = {2017},
-  month = jul,
-  journal = {Optica},
-  volume = {4},
-  number = {7},
-  pages = {736},
-  issn = {2334-2536},
-  doi = {10.1364/OPTICA.4.000736},
-  urldate = {2023-01-03},
-  langid = {english},
-}
-
 @article{ming_real-space,
   title = {Validities of Three Multislice Algorithms for Quantitative Low-Energy Transmission Electron Microscopy},
   author = {Ming, W.Q. and Chen, J.H.},

diff --git a/docs/user_guide/appendix/convergence.ipynb b/docs/user_guide/appendix/convergence.ipynb
diff --git a/docs/user_guide/appendix/ensembles.ipynb b/docs/user_guide/appendix/ensembles.ipynb
diff --git a/docs/user_guide/examples/notebooks/4d-stem_quickstart.ipynb b/docs/user_guide/examples/notebooks/4d-stem_quickstart.ipynb
diff --git a/docs/user_guide/examples/notebooks/cbed_quickstart.ipynb b/docs/user_guide/examples/notebooks/cbed_quickstart.ipynb
diff --git a/docs/user_guide/examples/notebooks/hrtem_quickstart.ipynb b/docs/user_guide/examples/notebooks/hrtem_quickstart.ipynb