Release/2.5 by olivhoenen · Pull Request #39 · iterorganization/IDStools

olivhoenen · 2026-07-30T13:16:55Z

Notes for release 2.5.0

New features

Add --no-provenance CLI option to remove information from the plots (Generalize no-provenance option to all plotting script #31 )
Add terminal plotting in idsprint to allow simple profile view when there is no X (Feature/show shape and terminal plot in idsprint #28 )

Improvements

More flexible handling of matplotlib backends (Feature/allow custom matplotlib backend #33 Let matplotlib choose its default backend #35 )
Add separatrix and boundary in plotequilibrium (Feature/add separatrix and magnetic axes in plotequilibrium #20 )
plotequilibrium option --rho is renamed as --phi, with better description
Improve failsafe in plotequicomp when some data is missing (Improve failsafe for plotequicomp when data is missing #18 )
Add more quantities filled-in by eqdsk2ids (Added Bphi computation from eqdsk data #44 )

Bug fixes

Fix idslist when using UDA URIs (Fix/incorrect handling of error/warning when idslist is applied to a uda uri #38 )
Fix missing labels with idsprint -p on several quantities (idsprint -p needs labels for all signals #29 )
Fix plot of edge data (use polycollection from matplotlib and use cells instead of nodes #22 )
Fix core_sources calculations and plots (fix: correct electron power calculation and improve plot visibility #21 )
Fix 2D grid orientation consistency (fix: correct psi 2D grid orientation for rectangular equilibrium grids #17 )
Fix compatibility with NumPy >= 2.0 (AttributeError: np.NaN was removed in the NumPy 2.0 release. Use np.nan instead. #10 )

fix/using np.nan as np.NaN was removed in the NumPy 2.0 release

…tion

…s_with_mastu_data Improve failsafe for plotequicomp when data is missing

…geom axis)

#17)

…nd_magnetic_axes_in_plotequilibrium

Bumps the actions-deps group with 4 updates: [actions/checkout](https://github.com/actions/checkout), [actions/setup-python](https://github.com/actions/setup-python), [actions/upload-artifact](https://github.com/actions/upload-artifact) and [actions/download-artifact](https://github.com/actions/download-artifact). Updates `actions/checkout` from 4 to 6 - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](actions/checkout@v4...v6) Updates `actions/setup-python` from 4 to 6 - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@v4...v6) Updates `actions/upload-artifact` from 4 to 7 - [Release notes](https://github.com/actions/upload-artifact/releases) - [Commits](actions/upload-artifact@v4...v7) Updates `actions/download-artifact` from 4 to 8 - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](actions/download-artifact@v4...v8) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: '6' dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions-deps - dependency-name: actions/setup-python dependency-version: '6' dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions-deps - dependency-name: actions/upload-artifact dependency-version: '7' dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions-deps - dependency-name: actions/download-artifact dependency-version: '8' dependency-type: direct:production update-type: version-update:semver-major dependency-group: actions-deps ... Signed-off-by: dependabot[bot] <support@github.com>

* use polycollection from matplotlib and use cells instead of nodes * Use Outer midplane, Outer divertor target, Inner divertor target values and plot the same

)

…ith reddish color

…uda uri (#38) * show warning/exception from IMAS-Python when time is not readble when using UDA uri * add cache_mode=none when not used in UDA URI * Moved URI handling into utils, simplified it using urllib.parse, added a reusable backend-specific query helper, automatically appended cache_mode=none to UDA URIs * removed add_default_uda_cache_mode function, simplified _replace and updated documentation

olivhoenen · 2026-07-31T08:08:40Z

@SimonPinches in the EB script associated with this release, we need in the module to either unset MPLBACKEND or setenv MPLBACKEND=TkAgg (to counterbalance the MPLBACKEND=Agg which is in matplotlib module and keep more user friendly default behaviour).

SimonPinches

I found three user-facing crashes in code paths this release ships (empty scalar leaf in idsprint, GGD data without a "cells" subset in plotedgeprofiles, and dbperf on entries with no readable IDS), plus a few behavioural changes worth either fixing or calling out in the release notes (forced cache_mode=none on UDA and the silent removal of --show-labels). Details in the line comments.

Assisted-by: Copilot:claude-5-sonnet

Co-authored-by: Simon Pinches <SimonPinches@users.noreply.github.com>

…string is updated

prasad-sawantdesai · 2026-09-09T09:15:51Z

@olivhoenen For the CI to pass at ITER, we also need this PR to be merged: #46

prasad-sawantdesai and others added 30 commits March 17, 2026 09:29

np.Nan->np.nan

54f15ae

Merge pull request #16 from prasad-sawantdesai/fix-numpy-nan-issue

a373d66

fix/using np.nan as np.NaN was removed in the NumPy 2.0 release

Merge branch 'main' into develop

527eb52

added separatrix, contour center, and magnetic axes with clockable op…

cb47065

…tion

Merge pull request #18 from prasad-sawantdesai/fix/plotequicomp_issue…

837a4df

…s_with_mastu_data Improve failsafe for plotequicomp when data is missing

added quantities and spacing between plots

7bc37fa

fixed integration with machine description

8759cdb

fixed colorbars position

1b927c9

fix color of separatrix

7538154

remove legend for quantities

5d0d18d

fixed formatting

cd82599

added documetation about tkinter installation

847b356

Add boundary overlays (outline, separatrix, x-points, strike-points, …

c5a3299

…geom axis)

do not join strike points and rename labels

09ea0b8

changed the marker for current center

0381773

reverted rho option and use of IMAS constants

dfa98ea

fixed formatting issue

e332fcb

contour_tree implementation DD4

0ba5b0e

removed boundary and made separatrix black

26bd780

fix: correct psi 2D grid orientation for rectangular equilibrium grids (

d3e566c

#17)

Merge branch 'iterorganization:develop' into feature/add_separatrix_a…

d570da9

…nd_magnetic_axes_in_plotequilibrium

add CODEOWNERS

61e1fb9

fix ci plan on bamboo (#25)

204c942

ci: add dependabot.yml to update github-actions (#24)

1090085

Merge branch 'iterorganization:develop' into feature/add_separatrix_a…

e57c1ab

…nd_magnetic_axes_in_plotequilibrium

use polycollection from matplotlib and use cells instead of nodes (#22)

b189ded

* use polycollection from matplotlib and use cells instead of nodes * Use Outer midplane, Outer divertor target, Inner divertor target values and plot the same

fix: correct electron power calculation and improve plot visibility (#21

ef439cf

)

added lazy=True and fixed bug in reading data

58b6352

magnetic_axis +, current center + , geometric axis x and separatrix w…

094c40f

…ith reddish color

olivhoenen requested review from SimonPinches and paulotex July 30, 2026 13:17

SimonPinches reviewed Aug 2, 2026

View reviewed changes

Show secondary separatrix if present (#40)

76eb800

olivhoenen temporarily deployed to testpypi August 11, 2026 06:28 — with GitHub Actions Inactive

olivhoenen and others added 19 commits August 12, 2026 15:34

Fix DD4 compatibility in plotequicomp

d8b9ff7

Assisted-by: Copilot:claude-5-sonnet

use the get_compat_attr() function in other tools

5705cfb

Added Bphi computation from eqdsk data (#44)

8e5e339

convert to standard Python object for rich library to render values

66fffdf

use has_value instead of len

aa4adc1

Update idstools/scripts/bin/idsprint

289872d

Co-authored-by: Simon Pinches <SimonPinches@users.noreply.github.com>

update plotext version

5203d12

Update idstools/view/edge_profiles.py

c907834

Co-authored-by: Simon Pinches <SimonPinches@users.noreply.github.com>

Update idstools/scripts/bin/dbperf

a02bdd9

Co-authored-by: Simon Pinches <SimonPinches@users.noreply.github.com>

Update idstools/compute/equilibrium.py

d5c0ce4

Co-authored-by: Simon Pinches <SimonPinches@users.noreply.github.com>

Update idstools/compute/equilibrium.py

5b23401

Co-authored-by: Simon Pinches <SimonPinches@users.noreply.github.com>

Update idstools/utils/utility_functions.py

224b207

Co-authored-by: Simon Pinches <SimonPinches@users.noreply.github.com>

Update idstools/scripts/bin/plotequicomp

760fc8a

Co-authored-by: Simon Pinches <SimonPinches@users.noreply.github.com>

fix pandas object print

8a93d3a

--show-labels option removal is documented. For UDA add_query_uri doc…

72a5d6d

…string is updated

disconnects old callbacks, and keeps callbacks independent per axes

90438e0

updated docstring

13f931b

reworded log message

8722852

fixed len parameter

903dd54

prasad-sawantdesai and others added 2 commits September 9, 2026 16:55

cleanup-CI-scripts-and-update-modules-to-2025b (#46)

99841ca

Merge branch 'develop' into release/2.5

2ed8e71

olivhoenen merged commit 66a0188 into main Sep 14, 2026
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Release/2.5 - #39

Release/2.5#39
olivhoenen merged 85 commits into
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Notes for release 2.5.0

New features

Improvements

Bug fixes

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