Release/2.5

.github/CODEOWNERS

@@ -0,0 +1,8 @@
+# CODEOWNERS: Controls automatic assignment of reviewers for pull requests.
+# -----------------------------------------------------------------------------
+# When a pull request modifies files matching a pattern, the listed code owners will be requested as reviewers.
+# Each line is a file pattern followed by one or more code owners (users or teams) who must review changes to that file.
+# Do not edit unless specifically mandated to do so.
+
+# Global/fallback and technical modifications.
+*   @SimonPinches @olivhoenen @prasad-sawantdesai 

.github/dependabot.yml

@@ -0,0 +1,15 @@
+version: 2
+updates:
+  # Enable version updates for Github Actions
+  - package-ecosystem: "github-actions"
+    # Look for `/.github/workflows` and `/action.yml` or `.yaml`
+    directory: "/"
+    # Check for updates once a week
+    schedule:
+      interval: "weekly"
+    # Group actions version bumps into a single PR
+    groups:
+      actions-deps:
+        patterns:
+          - "*"
+

.github/workflows/linting.yml

@@ -15,10 +15,10 @@ jobs:
 
     steps:
       - name: Checkout IDStools sources
-        uses: actions/checkout@v4
+        uses: actions/checkout@v7
 
       - name: Set up Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v7
         with:
           # until saxonche is available in 3.13
           # https://saxonica.plan.io/issues/6561

.github/workflows/publish.yml

@@ -10,11 +10,11 @@ jobs:
     name: Build distribution
     runs-on: ubuntu-22.04
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v7
       with:
         fetch-depth: 0 
     - name: Set up Python
-      uses: actions/setup-python@v5
+      uses: actions/setup-python@v7
       with:
         # until saxonche is available in 3.13
         # https://saxonica.plan.io/issues/6561
@@ -25,7 +25,7 @@ jobs:
     - name: Build a binary wheel and a source tarball
       run: python3 -m build .
     - name: Store the distribution packages
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@v7
       with:
         name: python-package-distributions
         path: dist/
@@ -43,7 +43,7 @@ jobs:
       id-token: write  # IMPORTANT: mandatory for trusted publishing
     steps:
     - name: Download all the dists
-      uses: actions/download-artifact@v4
+      uses: actions/download-artifact@v8
       with:
         name: python-package-distributions
         path: dist/
@@ -63,7 +63,7 @@ jobs:
       id-token: write  # IMPORTANT: mandatory for trusted publishing
     steps:
     - name: Download all the dists
-      uses: actions/download-artifact@v4
+      uses: actions/download-artifact@v8
       with:
         name: python-package-distributions
         path: dist/

.github/workflows/security.yml

@@ -10,10 +10,10 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v7
 
     - name: Set up Python
-      uses: actions/setup-python@v4
+      uses: actions/setup-python@v7
       with:
         python-version: '3.11'
         cache: 'pip'

.github/workflows/test_with_pytest.yml

@@ -17,11 +17,11 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v7
 
       - name: Set up Python ${{ matrix.python-version }}
 
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v7
         with:
           python-version: ${{ matrix.python-version }}
       - name: Display Python version
@@ -40,31 +40,31 @@ jobs:
           TEST_PROFILE: ci
 
       - name: Upload coverage report ${{ matrix.python-version }}
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: coverage-report-${{ matrix.python-version }}
           path: htmlcov
           if-no-files-found: warn
 
       - name: Upload coverage XML ${{ matrix.python-version }}
         if: always()
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: coverage-xml-${{ matrix.python-version }}
           path: coverage.xml
           if-no-files-found: warn
 
       - name: Upload test report ${{ matrix.python-version }}
         if: always()
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: test-report-${{ matrix.python-version }}
           path: junit.xml
           if-no-files-found: warn
 
       - name: Upload test output logs ${{ matrix.python-version }}
         if: always()
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: test-output-${{ matrix.python-version }}
           path: test_output.log

.github/workflows/verify_with_sphinx.yml

@@ -14,10 +14,10 @@ jobs:
 
     steps:
       - name: Checkout IDStools sources
-        uses: actions/checkout@v4
+        uses: actions/checkout@v7
 
       - name: Set up Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@v7
         with:
           # until saxonche is available in 3.13
           # https://saxonica.plan.io/issues/6561
@@ -50,7 +50,7 @@ jobs:
 
       - name: Upload Sphinx documentation as artifact
         if: always()
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v7
         with:
           name: sphinx-documentation
           path: docs/build/html/

README.md

@@ -60,11 +60,20 @@ plotequilibrium --uri "imas:mdsplus?user=public;pulse=134174;run=117;database=IT
 
 ## Requirements
 
-- Python ≥ 3.8
-- IMAS Python Access Layer (`imas-python`)
+- Python ≥ 3.10
+
+### Installed automatically via pip
 - NumPy, Matplotlib, Pandas
 - Rich (for enhanced terminal output)
 
+### Requires separate installation
+- **Tkinter** — usually bundled with Python but may require system packages:
+  - Linux (Debian/Ubuntu): `sudo apt install python3-tk`
+  - Linux (RHEL/CentOS/Rocky): `sudo dnf install python3-tkinter`
+  - Windows: included in the [python.org](https://www.python.org/downloads/) installer ("tcl/tk and IDLE" component, enabled by default)
+  - macOS (python.org installer): included by default
+  - macOS (Homebrew): `brew install python-tk` (or `brew install python-tk@3.x` for a specific version)
+
 ## Documentation
 
 Full documentation is available at the project repository. Each tool includes built-in help:

ci-sdcc/st00-header.sh

@@ -1,145 +1,41 @@
 #!/bin/bash
 source /etc/profile.d/modules.sh
-source ./ci-sdcc/utils.sh
-##########################################################################################
-#                     Set environment based on toolchain                                 #
-##########################################################################################
 
 module use /work/imas/etc/modules/all
-
-# expand aliases
 shopt -s expand_aliases
-
-#print hostname
-hostname -f
-
-IMAS_EXISTS=$(module -r -t list 2>&1 | grep -E "IMAS-AL-Core|IMAS-Core"  | head -n 1) 
-if [ -n "$IMAS_EXISTS" ]; then
-    echo "> Found already loaded IMAS Module : $IMAS_EXISTS"
-    ACCESS_LAYER_VERSION=$(echo "$AL_VERSION" | cut -d '.' -f 1)
-    TOOLCHAIN_VERSION=$(echo "$IMAS_EXISTS" | awk -F '-' '{print $(NF-1)"-"$NF}')
-else
-    echo "> IMAS Module is not loaded"
-fi
-
-if [ -n "$1" ] || [ -n "$2" ]; then
-    echo "> Compiling with $1 and Access Layer $2 with latest version of installed modules.Previously loaded modules will be purged.."
-    module purge
-    # If toolchain version is passed then purge all modules
-    if [ -n "$1" ]; then
-        TOOLCHAIN_VERSION="$1"
-    fi
-
-    # Get AL version
-    if [ -n "$2" ]; then
-        ACCESS_LAYER_VERSION="$2"
-    else
-        ACCESS_LAYER_VERSION="5"
-    fi
-fi
-
-if [ -z "$TOOLCHAIN_VERSION" ]; then
-    echo "> No toolchain found, Setting it to default : intel-2023b"
-    TOOLCHAIN_VERSION="intel-2023b"
-fi
-
-if [ -z "$ACCESS_LAYER_VERSION" ]; then
-    ACCESS_LAYER_VERSION="5"
-fi
-
-if [ -z "$DD_VERSION" ]; then 
-    DD_VERSION="3"
-else
-    DD_VERSION="$3"
-fi
-
-echo "> Building for $TOOLCHAIN_VERSION and Access Layer $ACCESS_LAYER_VERSION"
-
-if [[ $TOOLCHAIN_VERSION == *"intel"* ]]; then
-    FCOMPILER="ifort"
-fi
-if [[ $TOOLCHAIN_VERSION == *"foss"* ]]; then
-    FCOMPILER="gfortran"
-fi
-
-
-CORE_MODULE_VERSION=$(getIMASCoreModuleName "$TOOLCHAIN_VERSION" "$ACCESS_LAYER_VERSION" "$DD_VERSION")
-# load IMAS module first
-
-if [ -z "$IMAS_EXISTS" ]; then
-    echo "> IMAS is not loaded.. Loading Module $CORE_MODULE_VERSION"
-    module load "$CORE_MODULE_VERSION"
-fi
-
-GCCcore_VERSION=$(getGCCcoreVersion)
 module purge
 
-dependencies="./ci-sdcc/dependencies.txt"
-
-# Check if the file exists
-if [ ! -f "$dependencies" ]; then
-    echo "File $dependencies not found."
-    return 1
-fi
-
-declare -a RUNMODULES=()
-declare -a EBBRUNMODULES=()
-
-echo "-------------------------------------------------------"
-echo "> dependency modules"
-counter=0
-while IFS= read -r line || [[ -n $line ]]; do
-    line="${line// /}"
-    # for empty string continue
-    if [[ -z "$line" ]]; then
-        counter=$(("$counter" + 1))
-        continue
-    fi
-    # fix module version
-    if [[ $line == *"/"* ]]; then
-        echo "using fix module $line"
-        RUNMODULES["$counter"]="$line"
-        EBBRUNMODULES["$counter"]="('$line', EXTERNAL_MODULE),"
-        counter=$(("$counter" + 1))
-        continue
-    fi
-    # latest module version as it is not given
-    # if [[ $line == *"IMAS"* ]]; then
-    #     echo "    IMAS $CORE_MODULE_VERSION"
-    #     RUNMODULES["$counter"]="$CORE_MODULE_VERSION"
-    #     EBBRUNMODULES["$counter"]="('$CORE_MODULE_VERSION', EXTERNAL_MODULE),"
-    # else
-    module_version=$(getModuleName "$line" "$TOOLCHAIN_VERSION" "$GCCcore_VERSION")
-    echo "    $line $module_version"
-    RUNMODULES["$counter"]="$module_version"
-    EBBRUNMODULES["$counter"]=$(getModuleNameAndVersion "$module_version")
-
-    # fi
-    counter=$(("$counter" + 1))
-done <"$dependencies"
-echo "-------------------------------------------------------"
-
-echo "> Details of environment"
-echo "    TOOLCHAIN_VERSION : $TOOLCHAIN_VERSION"
-echo "    GCCcore_VERSION : $GCCcore_VERSION"
-echo "    IMAS VERSION : $CORE_MODULE_VERSION"
-echo "    RUNMODULES : " "${RUNMODULES[@]}"
-echo "    EBRUNMODULES : " "${EBBRUNMODULES[@]}"
-echo "    Compiler : $FCOMPILER"
-echo "-------------------------------------------------------"
-
-
-echo "> Loading run time modules"
-# Load build modules if they exist
-for imodule in "${RUNMODULES[@]}"; do
-    IFS='/' read -r iname iversion <<< "$imodule"
-    MODULE_EXISTS=$(module -r -t list 2>&1 | grep -E "$iname/")
-    if [ -z "$MODULE_EXISTS" ]; then
-        echo "    $iname not available, Loading $imodule"
-        module load "$imodule"
-    else
-        echo "    $MODULE_EXISTS already loaded"
-    fi
+# Check which modules env var is set
+if [ -n "${INTEL_MODULES:-}" ]; then
+    MODULES_LIST="$INTEL_MODULES"
+    export ENVIRONEMNT_NAME="intel"
+elif [ -n "${FOSS_MODULES:-}" ]; then
+    MODULES_LIST="$FOSS_MODULES"
+    export ENVIRONEMNT_NAME="foss"
+else
+    echo ""
+    echo "ERROR: Neither INTEL_MODULES nor FOSS_MODULES is set"
+    echo ""
+    echo "Please set one of these environment variables and run the script."
+    echo ""
+    echo "Examples:"
+    echo ""
+    echo "  For intel-2023b:"
+    echo "    export INTEL_MODULES=\"IMAS-Core/5.7.1-intel-2023b Tkinter/3.11.5-GCCcore-13.2.0 IMAS-Python/2.3.0-intel-2023b PyYAML/6.0.1-GCCcore-13.2.0\""
+    echo ""
+    echo "  For intel-2025b:"
+    echo "    export INTEL_MODULES=\"IMAS-Core/5.7.1-intel-2025b Tkinter/3.13.5-GCCcore-14.3.0 IMAS-Python/2.3.0-intel-2025b PyYAML/6.0.2-GCCcore-14.3.0\""
+    echo ""
+    echo "  For foss-2023b:"
+    echo "    export FOSS_MODULES=\"IMAS-Core/5.7.1-foss-2023b Tkinter/3.11.5-GCCcore-13.2.0 IMAS-Python/2.3.0-foss-2023b PyYAML/6.0.1-GCCcore-13.2.0\""
+    echo ""
+    echo "  For foss-2025b:"
+    echo "    export FOSS_MODULES=\"IMAS-Core/5.7.1-foss-2025b Tkinter/3.13.5-GCCcore-14.3.0 IMAS-Python/2.3.0-foss-2025b PyYAML/6.0.2-GCCcore-14.3.0\""
+    echo ""
+    exit 1
+fi
+
+# Load all modules
+for module in $MODULES_LIST; do
+    module load "$module"
 done
-echo "> Done"
-echo "-------------------------------------------------------"

ci-sdcc/st01-create-distribution.sh

@@ -3,8 +3,7 @@
 # Execute script from root directory
 
 # setup environment
-# Get toolchain version
-source ./ci-sdcc/st00-header.sh $1 $2
+source ./ci-sdcc/st00-header.sh
 
 if [[ "$(uname -n)" == *"bamboo"* ]]; then
     set -e -u -o pipefail

ci-sdcc/st02-install.sh

@@ -2,7 +2,7 @@
 # Bamboo CI script to build actor and run standalone program
 # Execute script from root directory
 
-source ./ci-sdcc/st00-header.sh $1 $2
+source ./ci-sdcc/st00-header.sh
 
 # Note Disable set -e option when using on local as it will exit the shell on error
 if [[ "$(uname -n)" == *"bamboo"* ]]; then