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feat: add Flow Cytometry Referee agent - #162

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Aziz Muminov (AzizMuminov) wants to merge 12 commits into
microsoft:mainfrom
AzizMuminov:flow-cytometry-referee
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feat: add Flow Cytometry Referee agent#162
Aziz Muminov (AzizMuminov) wants to merge 12 commits into
microsoft:mainfrom
AzizMuminov:flow-cytometry-referee

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@AzizMuminov Aziz Muminov (AzizMuminov) commented Sep 20, 2026

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Adds a Flow Cytometry Referee prompt agent and flow-qc Python environment for evidence-based technical review of FCS quality, compensation metadata, controls, gating documentation, and reproducibility. The tool provides deterministic QC metrics plus optional unsupervised event-outlier scoring; it is not a clinical or diagnostic classifier.

Validation: synthetic-data smoke test and repository catalog validation passed.

@github-actions github-actions Bot added needs-human-review Awaiting human approval 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. labels Sep 20, 2026
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✅ Automated Check Results — All checks passed

All structural, schema, content, documentation, and secret scan checks passed.

This PR is ready for human review. The maintainers have been automatically requested.

Reminder: 1 approval from a CODEOWNERS reviewer is required before this PR can be merged.

@github-actions github-actions Bot added 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. and removed 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. labels Sep 20, 2026
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✅ Automated Check Results — All checks passed

All structural, schema, content, documentation, and secret scan checks passed.

This PR is ready for human review. The maintainers have been automatically requested.

Reminder: 1 approval from a CODEOWNERS reviewer is required before this PR can be merged.

@github-actions github-actions Bot added 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. and removed 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. labels Sep 21, 2026
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✅ Automated Check Results — All checks passed

All structural, schema, content, documentation, and secret scan checks passed.

This PR is ready for human review. The maintainers have been automatically requested.

Reminder: 1 approval from a CODEOWNERS reviewer is required before this PR can be merged.

@github-actions github-actions Bot added 3p-contribution Authored by a third-party partner (party='3p' in metadata) and removed 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. labels Sep 21, 2026
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✅ Automated Check Results — All checks passed

All structural, schema, content, documentation, and secret scan checks passed.

This PR is ready for human review. The maintainers have been automatically requested.

Reminder: 1 approval from a CODEOWNERS reviewer is required before this PR can be merged.

@github-actions github-actions Bot added 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. and removed 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. labels Sep 22, 2026
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✅ Automated Check Results — All checks passed

All structural, schema, content, documentation, and secret scan checks passed.

This PR is ready for human review. The maintainers have been automatically requested.

Reminder: 1 approval from a CODEOWNERS reviewer is required before this PR can be merged.

@github-actions github-actions Bot added 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. and removed 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. labels Sep 22, 2026
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✅ Automated Check Results — All checks passed

All structural, schema, content, documentation, and secret scan checks passed.

This PR is ready for human review. The maintainers have been automatically requested.

Reminder: 1 approval from a CODEOWNERS reviewer is required before this PR can be merged.

@github-actions github-actions Bot added 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. and removed 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. labels Sep 22, 2026
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✅ Automated Check Results — All checks passed

All structural, schema, content, documentation, and secret scan checks passed.

This PR is ready for human review. The maintainers have been automatically requested.

Reminder: 1 approval from a CODEOWNERS reviewer is required before this PR can be merged.

@github-actions github-actions Bot added 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. and removed 3p-contribution Authored by a third-party partner (party='3p' in metadata) pr-validation-passed The pr-review workflow's validator passed. Other status checks report separately. labels Sep 22, 2026
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✅ Automated Check Results — All checks passed

All structural, schema, content, documentation, and secret scan checks passed.

This PR is ready for human review. The maintainers have been automatically requested.

Reminder: 1 approval from a CODEOWNERS reviewer is required before this PR can be merged.

faranm-stack added a commit to faranm-stack/discovery that referenced this pull request Sep 23, 2026
@faranm-stack
test: verify Flow QC PR 162 in isolated CI
5af9efb 
Pin microsoft#162 to 839f7f6 and verify source blob hashes. Build its unchanged image, run upstream smoke tests and explicit QC review-acceptance cases with synthetic fixtures, and preserve logs/artifacts.

Fork-only validation branch; 15-minute limit, read-only token, no secrets or Azure deployments, and no upstream PR changes.

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>
@claude
Merge microsoft/discovery main into flow-cytometry-referee
43acee4
@claude
fix: satisfy catalog validator for flow-cytometry-referee metadata
c713a67 
Use tags from the catalog tag taxonomy (TAG-001) and a publisher contact
on a domain with mail records (POL-019).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01XFLpKccL6CTJgiSa9uFAfX
@AzizMuminov
Aziz Muminov (AzizMuminov) requested a review from a team as a code owner October 27, 2026 19:00
@faranm-stack faranm-stack mentioned this pull request Oct 28, 2026
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@AzizMuminov @claude