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1. b-vac b-vac Public

   B-vac is a standalone, offline Python-based tool for reverse-vaccinology-driven bacterial vaccine design. It screens bacterial proteomes through Localization, Non-Host Homolog, Virulence Factor, an…

   HTML

2. paampdb paampdb Public

   PAAMPdb is a curated database of experimentally reported antimicrobial peptides (AMPs) targeting Pseudomonas aeruginosa. It provides antimicrobial activity data, peptide information, structural mod…

   HTML

3. python-basics-for-life-scientists python-basics-for-life-scientists Public

   Python Programming Fundamentals for Life Scientists is an open-source, biological-first curriculum designed for researchers, students, and computational biologists. Learn core Python, data structur…

   Jupyter Notebook

4. tracereview tracereview Public

   TraceReview is an open-source, agentic AI system for literature reviews. It uses LangGraph and LLMs to plan research, retrieve and select papers, generate concise summaries, and produce structured …

   Python

5. B-Pan B-Pan Public

   Pan-genome analysis and COG-based functional annotation tool for bacterial proteomes. Built in Python with a Tkinter GUI. Performs core/accessory/unique gene classification and phylogenetic analysi…

   HTML

6. VacSol-ML-ESKAPE-Installable VacSol-ML-ESKAPE-Installable Public

   Machine learning framework for vaccine target discovery in ESKAPE pathogens — extracts sequence-based features and classifies candidate proteins with confidence scoring. Installable via pip, includ…

   JavaScript