A curated database resource for experimentally reported antimicrobial peptides, their structural models, and residue-level interactions with target proteins.
PAAMPdb is a curated database resource specializing in experimentally reported antimicrobial peptides (AMPs) targeting Pseudomonas aeruginosa. The database brings together curated experimental information on reported AMPs, including antimicrobial effectiveness, peptide-related information, structural models, and residue-level interactions between AMPs and target proteins.
| Resource | Link |
|---|---|
| 🌐 Web database | mgbio.asab.nust.edu.pk/paampdb |
| 🔎 Search AMP–target proteins | Open search |
| 📊 Database statistics | View statistics |
| 💻 Source code | github.com/samavinasir/paampdb |
| Feature | Description | |
|---|---|---|
| 🧬 | Curated AMP information | Provides curated information on antimicrobial peptides reported against P. aeruginosa. |
| 🧪 | Antimicrobial activity | Includes experimental information describing the antimicrobial effectiveness of reported peptides. |
| 📋 | Peptide information | Provides relevant peptide-level information for exploring and comparing AMP candidates. |
| 🔬 | Structural models | Includes a range of homology-based structural models associated with AMP-related analyses. |
| 🔗 | AMP–target interactions | Provides residue-level information describing interactions between antimicrobial peptides and their target proteins. |
| 🔎 | Search and exploration | Enables users to explore the curated database and identify AMPs of interest for further investigation. |
PAAMPdb is intended to support research in:
- 💊 Antimicrobial peptide discovery
- 🦠 P. aeruginosa research
- 🛡️ Antimicrobial resistance studies
- 🔗 AMP–protein interaction analysis
- 🧱 Structural bioinformatics
- 🎯 Therapeutic target exploration
- 🌱 Development of alternative antimicrobial strategies
The database focuses specifically on Pseudomonas aeruginosa, an important bacterial pathogen associated with antimicrobial resistance and clinically relevant infections.
If you use PAAMPdb in your research, please cite the associated publication when available.
PAAMPdb is developed and maintained by the Microbial Genomics & Bioinformatics Research Group (MGB), Atta-ur-Rahman School of Applied Biosciences (ASAB), National University of Sciences and Technology (NUST), Islamabad, Pakistan.
- 🌐 Database: mgbio.asab.nust.edu.pk/paampdb
- ✉️ Contact page: mgbio.asab.nust.edu.pk/paampdb/contact
- 💻 GitHub: samavinasir/paampdb
PAAMPdb is licensed under the Apache License 2.0.
See the LICENSE file for the full license text.
Built for accessible, data-driven antimicrobial peptide research.
PAAMPdb · Antimicrobial Peptides · Pseudomonas aeruginosa · NUST Islamabad