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Add list arguments for reads - #305

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wwood merged 1 commit into
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read-file-lists
Oct 12, 2026
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wwood merged 1 commit into
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read-file-lists

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@AroneyS

@AroneyS AroneyS commented Oct 12, 2026

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--read1-list, --read2-list, --coupled-list, --interleaved-list and --single-list read inputs

Each takes one or more files listing read paths, one per line (forward and reverse separated by a tab for --coupled-list). Available for genome, contig and make, and can be combined with the direct read arguments.

…d --single-list read inputs

Each takes one or more files listing read paths, one per line (forward and
reverse separated by a tab for --coupled-list). Available for genome,
contig and make, and can be combined with the direct read arguments.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
@wwood
wwood merged commit 0419075 into main Oct 12, 2026
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@wwood
wwood deleted the read-file-lists branch October 12, 2026 01:43
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2 participants