Skip to content

Pull requests: nf-core/modules

New pull request New
198 Open 8,690 Closed
198 Open 8,690 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Fix unstable results on second attempts in svdb/merge
#12240 opened Jul 4, 2026 by fellen31 Contributor Loading…
17 tasks
new module: fastaguard
#12239 opened Jul 3, 2026 by ehsanestaji Contributor Loading…
14 of 15 tasks
Add new subworkflow: ubam_align_minimap2
#12238 opened Jul 3, 2026 by manascripts Member Loading…
7 of 17 tasks
Updated containers, fixed medium syntaxis size/m
#12237 opened Jul 3, 2026 by brovolia Contributor Loading…
1
1
Update deacon module
#12236 opened Jul 3, 2026 by sofstam Contributor Loading…
17 tasks
Add subworkflow: fastq_align_minimap2 Ready for Review size/m
#12235 opened Jul 3, 2026 by manascripts Member Loading…
8 of 17 tasks
Update to topic megan awaiting-changes will be closed after 30 days
#12231 opened Jul 2, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
5
gstama_polyacleanup: Fixed regression - Fixing output glob awaiting-changes will be closed after 30 days
#12228 opened Jul 2, 2026 by sguizard Contributor Loading…
3
Add ciri2 module draft
#12224 opened Jul 1, 2026 by razmia02 • Draft
17 tasks
Added nf-core module presto/pairseq Ready for Review
#12222 opened Jul 1, 2026 by Vivian0105 Contributor Loading…
17 tasks
2
Limit fix linting to changed files
#12221 opened Jul 1, 2026 by mashehu Contributor Loading…
update telescope version to 1.0.4 awaiting-changes will be closed after 30 days
#12218 opened Jul 1, 2026 by hanalysis Contributor Loading…
10
Seqkit replace - fix #9647 and #9646 awaiting-changes will be closed after 30 days
#12213 opened Jul 1, 2026 by ammaraziz Contributor Loading…
1
1
Update: pangolin modules awaiting-changes will be closed after 30 days
#12211 opened Jul 1, 2026 by ammaraziz Contributor Loading…
6
chore(deps): update dependency nextflow-io/nextflow to v25.10.6 size/xs
#12210 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
chore(deps): update dotnet monorepo size/xs
#12209 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
chore(deps): pin nvcr.io/nvidia/tensorflow docker tag to 9206ed8 size/xs
#12208 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
feat: add vcontact3/run module awaiting-changes will be closed after 30 days
#12198 opened Jun 30, 2026 by JP-Bro Contributor Loading…
6 tasks done
1
14
Add new module: caddsv/run Ready for Review
#12189 opened Jun 29, 2026 by manascripts Member Loading…
12 of 17 tasks
1
porting subworkflow Bam applybqsr to nf core modules awaiting-changes will be closed after 30 days size/l
#12188 opened Jun 29, 2026 by agrima2010 Loading…
17 tasks
17
Add new component: quarto/partial Ready for Review
#12187 opened Jun 29, 2026 by fasterius Contributor Loading…
11 of 13 tasks
Mirtrace topics migration awaiting-changes will be closed after 30 days
#12183 opened Jun 26, 2026 by EfraMP Member Loading…
8 of 17 tasks
1
new module: cellpheno/nis awaiting-changes will be closed after 30 days
#12179 opened Jun 26, 2026 by Chrisa142857 Member Loading…
9 of 12 tasks
1
4
feat: add bwamem3 modules (index and mem) new module Adding a new module Ready for Review
#12174 opened Jun 26, 2026 by nh13 Member Loading…
6 tasks done
10
add pixi env size/s
#12165 opened Jun 25, 2026 by matthdsm Contributor Loading…
17 tasks
7
ProTip! Filter pull requests by the default branch with base:master.